ASL DRO
latest
Contents:
Installation
Quickstart
Parameters
DRO Output Data
Input Ground Truth
Making an input ground truth
ASL Quantification
Development
References
API Reference
ASL DRO
»
Index
Edit on GitHub
Index
A
|
B
|
C
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
V
|
W
A
AcquireMriImageFilter (class in asldro.filters.acquire_mri_image_filter)
add_child_filter() (asldro.filters.basefilter.BaseFilter method)
add_input() (asldro.filters.basefilter.BaseFilter method)
add_inputs() (asldro.filters.basefilter.BaseFilter method)
add_parent_filter() (asldro.filters.basefilter.BaseFilter method)
AddComplexNoiseFilter (class in asldro.filters.add_complex_noise_filter)
AddNoiseFilter (class in asldro.filters.add_noise_filter)
affine() (asldro.containers.image.BaseImageContainer property)
(asldro.containers.image.NiftiImageContainer property)
(asldro.containers.image.NumpyImageContainer property)
AffineMatrixFilter (class in asldro.filters.affine_matrix_filter)
and_validator() (in module asldro.validators.parameters)
AppendMetadataFilter (class in asldro.filters.append_metadata_filter)
as_nifti() (asldro.containers.image.BaseImageContainer method)
(asldro.containers.image.NiftiImageContainer method)
(asldro.containers.image.NumpyImageContainer method)
as_numpy() (asldro.containers.image.BaseImageContainer method)
(asldro.containers.image.NiftiImageContainer method)
(asldro.containers.image.NumpyImageContainer method)
asl_context_length_validator_generator() (in module asldro.validators.user_parameter_input)
ASL_CONTEXT_MAPPING (asldro.filters.load_asl_bids_filter.LoadAslBidsFilter attribute)
asl_quant_lsq_gkm() (asldro.filters.asl_quantification_filter.AslQuantificationFilter static method)
asl_quant_wp_casl() (asldro.filters.asl_quantification_filter.AslQuantificationFilter static method)
asl_quant_wp_pasl() (asldro.filters.asl_quantification_filter.AslQuantificationFilter static method)
asldro
module
asldro.containers
module
asldro.containers.image
module
asldro.data
module
asldro.data.affine_test_data
module
asldro.data.filepaths
module
asldro.definitions
module
asldro.filters
module
asldro.filters.acquire_mri_image_filter
module
asldro.filters.add_complex_noise_filter
module
asldro.filters.add_noise_filter
module
asldro.filters.affine_matrix_filter
module
asldro.filters.append_metadata_filter
module
asldro.filters.asl_quantification_filter
module
asldro.filters.background_suppression_filter
module
asldro.filters.basefilter
module
asldro.filters.combine_fuzzy_masks_filter
module
asldro.filters.combine_time_series_filter
module
asldro.filters.create_volumes_from_seg_mask
module
asldro.filters.filter_block
module
asldro.filters.fourier_filter
module
asldro.filters.gkm_filter
module
asldro.filters.ground_truth_loader
module
asldro.filters.image_tools
module
asldro.filters.invert_image_filter
module
asldro.filters.json_loader
module
asldro.filters.load_asl_bids_filter
module
asldro.filters.mri_signal_filter
module
asldro.filters.nifti_loader
module
asldro.filters.phase_magnitude_filter
module
asldro.filters.resample_filter
module
asldro.filters.scale_offset_filter
module
asldro.filters.transform_resample_image_filter
module
asldro.pipelines
module
asldro.pipelines.check_nifti_units
module
asldro.pipelines.combine_masks
module
asldro.pipelines.generate_ground_truth
module
asldro.utils
module
asldro.utils.general
module
asldro.utils.generate_numeric_function
module
asldro.utils.resampling
module
asldro.validators
module
asldro.validators.ground_truth_json
module
asldro.validators.parameters
module
asldro.validators.schemas
module
asldro.validators.schemas.index
module
asldro.validators.user_parameter_input
module
AslQuantificationFilter (class in asldro.filters.asl_quantification_filter)
B
BackgroundSuppressionFilter (class in asldro.filters.background_suppression_filter)
BaseFilter (class in asldro.filters.basefilter)
BaseFilterException
BaseImageContainer (class in asldro.containers.image)
C
calculate_delta_m_gkm() (asldro.filters.gkm_filter.GkmFilter static method)
calculate_delta_m_whitepaper() (asldro.filters.gkm_filter.GkmFilter static method)
calculate_mz() (asldro.filters.background_suppression_filter.BackgroundSuppressionFilter static method)
calculate_pulse_efficiency() (asldro.filters.background_suppression_filter.BackgroundSuppressionFilter static method)
CASL (asldro.filters.gkm_filter.GkmFilter attribute)
CEIL (asldro.filters.image_tools.FloatToIntImageFilter attribute)
check_and_make_image_from_value() (asldro.filters.gkm_filter.GkmFilter static method)
check_nifti_units() (in module asldro.pipelines.check_nifti_units)
clone() (asldro.containers.image.BaseImageContainer method)
combine_fuzzy_masks() (in module asldro.pipelines.combine_masks)
CombineFuzzyMasksFilter (class in asldro.filters.combine_fuzzy_masks_filter)
CombineTimeSeriesFilter (class in asldro.filters.combine_time_series_filter)
compute_arrival_state_masks() (asldro.filters.gkm_filter.GkmFilter static method)
CONTINUOUS (asldro.filters.resample_filter.ResampleFilter attribute)
CONTRAST_GE (asldro.filters.mri_signal_filter.MriSignalFilter attribute)
CONTRAST_IR (asldro.filters.mri_signal_filter.MriSignalFilter attribute)
CONTRAST_SE (asldro.filters.mri_signal_filter.MriSignalFilter attribute)
CreateVolumesFromSegMask (class in asldro.filters.create_volumes_from_seg_mask)
E
EFF_IDEAL (asldro.filters.background_suppression_filter.BackgroundSuppressionFilter attribute)
EFF_REALISTIC (asldro.filters.background_suppression_filter.BackgroundSuppressionFilter attribute)
ESTIMATION_ALGORITHM (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
F
FftFilter (class in asldro.filters.fourier_filter)
FilterBlock (class in asldro.filters.filter_block)
FilterInputKeyError
FilterInputValidationError
FilterLoopError
FIT_IMAGE_NAME (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
FIT_IMAGE_UNITS (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
FloatToIntImageFilter (class in asldro.filters.image_tools)
FLOOR (asldro.filters.image_tools.FloatToIntImageFilter attribute)
for_each_validator() (in module asldro.validators.parameters)
from_list_validator() (in module asldro.validators.parameters)
FULL (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
G
generate_circular_function_array() (in module asldro.utils.generate_numeric_function)
generate_gaussian_function() (in module asldro.utils.generate_numeric_function)
generate_hrgt() (in module asldro.pipelines.generate_ground_truth)
generate_parameter_distribution() (in module asldro.validators.user_parameter_input)
generate_point_function() (in module asldro.utils.generate_numeric_function)
generate_random_numbers() (in module asldro.utils.general)
get_defaults() (asldro.validators.parameters.ParameterValidator method)
get_example_input_params() (in module asldro.validators.user_parameter_input)
GkmFilter (class in asldro.filters.gkm_filter)
greater_than_equal_to_validator() (in module asldro.validators.parameters)
greater_than_validator() (in module asldro.validators.parameters)
GroundTruthLoaderFilter (class in asldro.filters.ground_truth_loader)
H
has_attribute_value_validator() (in module asldro.validators.parameters)
has_nifti() (asldro.containers.image.BaseImageContainer property)
(asldro.containers.image.NiftiImageContainer property)
(asldro.containers.image.NumpyImageContainer property)
header() (asldro.containers.image.NiftiImageContainer property)
(asldro.containers.image.NumpyImageContainer property)
I
IfftFilter (class in asldro.filters.fourier_filter)
image() (asldro.containers.image.BaseImageContainer property)
(asldro.containers.image.NiftiImageContainer property)
(asldro.containers.image.NumpyImageContainer property)
INPUT_IMAGE_REGEX_OBJ (asldro.filters.combine_time_series_filter.CombineTimeSeriesFilter attribute)
INTERPOLATION_LIST (asldro.filters.resample_filter.ResampleFilter attribute)
(asldro.filters.transform_resample_image_filter.TransformResampleImageFilter attribute)
InvertImageFilter (class in asldro.filters.invert_image_filter)
isinstance_validator() (in module asldro.validators.parameters)
J
JsonLoaderFilter (class in asldro.filters.json_loader)
K
KEY_ACQ_CONTRAST (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.mri_signal_filter.MriSignalFilter attribute)
KEY_ACQ_TYPE (asldro.filters.mri_signal_filter.MriSignalFilter attribute)
KEY_AFFINE (asldro.filters.affine_matrix_filter.AffineMatrixFilter attribute)
(asldro.filters.resample_filter.ResampleFilter attribute)
KEY_AFFINE_INVERSE (asldro.filters.affine_matrix_filter.AffineMatrixFilter attribute)
KEY_AFFINE_LAST (asldro.filters.affine_matrix_filter.AffineMatrixFilter attribute)
KEY_ASLCONTEXT_FILENAME (asldro.filters.load_asl_bids_filter.LoadAslBidsFilter attribute)
KEY_BACKGROUND_SUPPRESSION (asldro.filters.mri_signal_filter.MriSignalFilter attribute)
KEY_CONTROL (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
(asldro.filters.load_asl_bids_filter.LoadAslBidsFilter attribute)
KEY_DELTA_M (asldro.filters.gkm_filter.GkmFilter attribute)
KEY_ECHO_TIME (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.mri_signal_filter.MriSignalFilter attribute)
KEY_EXCITATION_FLIP_ANGLE (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.mri_signal_filter.MriSignalFilter attribute)
KEY_FILENAME (asldro.filters.json_loader.JsonLoaderFilter attribute)
KEY_FUZZY_MASK (asldro.filters.combine_fuzzy_masks_filter.CombineFuzzyMasksFilter attribute)
KEY_GROUND_TRUTH_MODULATE (asldro.filters.ground_truth_loader.GroundTruthLoaderFilter attribute)
KEY_IMAGE (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.add_complex_noise_filter.AddComplexNoiseFilter attribute)
(asldro.filters.add_noise_filter.AddNoiseFilter attribute)
(asldro.filters.append_metadata_filter.AppendMetadataFilter attribute)
(asldro.filters.combine_time_series_filter.CombineTimeSeriesFilter attribute)
(asldro.filters.create_volumes_from_seg_mask.CreateVolumesFromSegMask attribute)
(asldro.filters.fourier_filter.FftFilter attribute)
(asldro.filters.fourier_filter.IfftFilter attribute)
(asldro.filters.ground_truth_loader.GroundTruthLoaderFilter attribute)
(asldro.filters.image_tools.FloatToIntImageFilter attribute)
(asldro.filters.mri_signal_filter.MriSignalFilter attribute)
(asldro.filters.phase_magnitude_filter.PhaseMagnitudeFilter attribute)
(asldro.filters.resample_filter.ResampleFilter attribute)
(asldro.filters.scale_offset_filter.ScaleOffsetFilter attribute)
(asldro.filters.transform_resample_image_filter.TransformResampleImageFilter attribute)
KEY_IMAGE_FILENAME (asldro.filters.load_asl_bids_filter.LoadAslBidsFilter attribute)
KEY_IMAGE_FLAVOUR (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.mri_signal_filter.MriSignalFilter attribute)
KEY_IMAGE_INFO (asldro.filters.create_volumes_from_seg_mask.CreateVolumesFromSegMask attribute)
KEY_IMAGE_OVERRIDE (asldro.filters.ground_truth_loader.GroundTruthLoaderFilter attribute)
KEY_INTERPOLATION (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.resample_filter.ResampleFilter attribute)
(asldro.filters.transform_resample_image_filter.TransformResampleImageFilter attribute)
KEY_INV_PULSE_TIMES (asldro.filters.background_suppression_filter.BackgroundSuppressionFilter attribute)
KEY_INVERSION_FLIP_ANGLE (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.mri_signal_filter.MriSignalFilter attribute)
KEY_INVERSION_TIME (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.mri_signal_filter.MriSignalFilter attribute)
KEY_LABEL (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
(asldro.filters.load_asl_bids_filter.LoadAslBidsFilter attribute)
KEY_LABEL_DURATION (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
(asldro.filters.gkm_filter.GkmFilter attribute)
KEY_LABEL_EFFICIENCY (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
(asldro.filters.gkm_filter.GkmFilter attribute)
KEY_LABEL_NAMES (asldro.filters.create_volumes_from_seg_mask.CreateVolumesFromSegMask attribute)
KEY_LABEL_TYPE (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
(asldro.filters.gkm_filter.GkmFilter attribute)
KEY_LABEL_VALUES (asldro.filters.create_volumes_from_seg_mask.CreateVolumesFromSegMask attribute)
KEY_LAMBDA_BLOOD_BRAIN (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
(asldro.filters.gkm_filter.GkmFilter attribute)
KEY_M0 (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
(asldro.filters.gkm_filter.GkmFilter attribute)
(asldro.filters.load_asl_bids_filter.LoadAslBidsFilter attribute)
(asldro.filters.mri_signal_filter.MriSignalFilter attribute)
KEY_MAG_ENC (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.mri_signal_filter.MriSignalFilter attribute)
KEY_MAG_STRENGTH (asldro.filters.ground_truth_loader.GroundTruthLoaderFilter attribute)
KEY_MAG_TIME (asldro.filters.background_suppression_filter.BackgroundSuppressionFilter attribute)
KEY_MAG_Z (asldro.filters.background_suppression_filter.BackgroundSuppressionFilter attribute)
KEY_MAGNITUDE (asldro.filters.phase_magnitude_filter.PhaseMagnitudeFilter attribute)
KEY_METADATA (asldro.filters.append_metadata_filter.AppendMetadataFilter attribute)
KEY_METHOD (asldro.filters.image_tools.FloatToIntImageFilter attribute)
KEY_MODEL (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
(asldro.filters.gkm_filter.GkmFilter attribute)
KEY_MULTIPHASE_INDEX (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
KEY_NUM_INV_PULSES (asldro.filters.background_suppression_filter.BackgroundSuppressionFilter attribute)
KEY_OFFSET (asldro.filters.scale_offset_filter.ScaleOffsetFilter attribute)
KEY_PARAMETER_OVERRIDE (asldro.filters.ground_truth_loader.GroundTruthLoaderFilter attribute)
KEY_PARAMETERS (asldro.filters.ground_truth_loader.GroundTruthLoaderFilter attribute)
KEY_PERFUSION_RATE (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
(asldro.filters.gkm_filter.GkmFilter attribute)
KEY_PERFUSION_RATE_ERR (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
KEY_PHASE (asldro.filters.phase_magnitude_filter.PhaseMagnitudeFilter attribute)
KEY_POST_LABEL_DELAY (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
KEY_PULSE_EFFICIENCY (asldro.filters.background_suppression_filter.BackgroundSuppressionFilter attribute)
KEY_QUANTITIES (asldro.filters.create_volumes_from_seg_mask.CreateVolumesFromSegMask attribute)
(asldro.filters.ground_truth_loader.GroundTruthLoaderFilter attribute)
KEY_QUANTITY (asldro.filters.ground_truth_loader.GroundTruthLoaderFilter attribute)
KEY_REF_IMAGE (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.add_complex_noise_filter.AddComplexNoiseFilter attribute)
(asldro.filters.add_noise_filter.AddNoiseFilter attribute)
KEY_REGION_PRIORITY (asldro.filters.combine_fuzzy_masks_filter.CombineFuzzyMasksFilter attribute)
KEY_REGION_VALUES (asldro.filters.combine_fuzzy_masks_filter.CombineFuzzyMasksFilter attribute)
KEY_REPETITION_TIME (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.mri_signal_filter.MriSignalFilter attribute)
KEY_ROOT_OBJECT_NAME (asldro.filters.json_loader.JsonLoaderFilter attribute)
KEY_ROTATION (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.affine_matrix_filter.AffineMatrixFilter attribute)
(asldro.filters.transform_resample_image_filter.TransformResampleImageFilter attribute)
KEY_ROTATION_ORIGIN (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.affine_matrix_filter.AffineMatrixFilter attribute)
(asldro.filters.transform_resample_image_filter.TransformResampleImageFilter attribute)
KEY_SAT_PULSE_TIME (asldro.filters.background_suppression_filter.BackgroundSuppressionFilter attribute)
KEY_SCALE (asldro.filters.affine_matrix_filter.AffineMatrixFilter attribute)
(asldro.filters.scale_offset_filter.ScaleOffsetFilter attribute)
KEY_SCHEMA (asldro.filters.json_loader.JsonLoaderFilter attribute)
KEY_SEG_MASK (asldro.filters.combine_fuzzy_masks_filter.CombineFuzzyMasksFilter attribute)
(asldro.filters.create_volumes_from_seg_mask.CreateVolumesFromSegMask attribute)
KEY_SEGMENTATION (asldro.filters.ground_truth_loader.GroundTruthLoaderFilter attribute)
KEY_SHAPE (asldro.filters.resample_filter.ResampleFilter attribute)
KEY_SIDECAR (asldro.filters.load_asl_bids_filter.LoadAslBidsFilter attribute)
KEY_SIDECAR_FILENAME (asldro.filters.load_asl_bids_filter.LoadAslBidsFilter attribute)
KEY_SIGNAL_TIME (asldro.filters.gkm_filter.GkmFilter attribute)
KEY_SNR (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.add_complex_noise_filter.AddComplexNoiseFilter attribute)
(asldro.filters.add_noise_filter.AddNoiseFilter attribute)
KEY_SOURCE (asldro.filters.load_asl_bids_filter.LoadAslBidsFilter attribute)
KEY_STD_ERROR (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
KEY_T1 (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.background_suppression_filter.BackgroundSuppressionFilter attribute)
(asldro.filters.mri_signal_filter.MriSignalFilter attribute)
KEY_T1_ARTERIAL_BLOOD (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
(asldro.filters.gkm_filter.GkmFilter attribute)
KEY_T1_OPT (asldro.filters.background_suppression_filter.BackgroundSuppressionFilter attribute)
KEY_T1_TISSUE (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
(asldro.filters.gkm_filter.GkmFilter attribute)
KEY_T2 (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.mri_signal_filter.MriSignalFilter attribute)
KEY_T2_STAR (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.mri_signal_filter.MriSignalFilter attribute)
KEY_TARGET_SHAPE (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.transform_resample_image_filter.TransformResampleImageFilter attribute)
KEY_THRESHOLD (asldro.filters.combine_fuzzy_masks_filter.CombineFuzzyMasksFilter attribute)
KEY_TRANSIT_TIME (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
(asldro.filters.gkm_filter.GkmFilter attribute)
KEY_TRANSIT_TIME_ERR (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
KEY_TRANSLATION (asldro.filters.acquire_mri_image_filter.AcquireMriImageFilter attribute)
(asldro.filters.affine_matrix_filter.AffineMatrixFilter attribute)
(asldro.filters.transform_resample_image_filter.TransformResampleImageFilter attribute)
KEY_UNITS (asldro.filters.create_volumes_from_seg_mask.CreateVolumesFromSegMask attribute)
(asldro.filters.ground_truth_loader.GroundTruthLoaderFilter attribute)
L
LINEAR (asldro.filters.resample_filter.ResampleFilter attribute)
LIST_FIELDS_TO_EXCLUDE (asldro.filters.load_asl_bids_filter.LoadAslBidsFilter attribute)
list_of_type_validator() (in module asldro.validators.parameters)
load_schemas() (in module asldro.validators.schemas.index)
LoadAslBidsFilter (class in asldro.filters.load_asl_bids_filter)
M
M0_TOL (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
M_BACKGROUND_SUPPRESSION (asldro.filters.background_suppression_filter.BackgroundSuppressionFilter attribute)
M_BOLUS_CUT_OFF_DELAY_TIME (asldro.filters.gkm_filter.GkmFilter attribute)
M_BOLUS_CUT_OFF_FLAG (asldro.filters.gkm_filter.GkmFilter attribute)
M_BSUP_INV_PULSE_TIMING (asldro.filters.background_suppression_filter.BackgroundSuppressionFilter attribute)
M_BSUP_NUM_PULSES (asldro.filters.background_suppression_filter.BackgroundSuppressionFilter attribute)
M_BSUP_SAT_PULSE_TIMING (asldro.filters.background_suppression_filter.BackgroundSuppressionFilter attribute)
M_GKM_MODEL (asldro.filters.gkm_filter.GkmFilter attribute)
M_POST_LABEL_DELAY (asldro.filters.gkm_filter.GkmFilter attribute)
map_dict() (in module asldro.utils.general)
metadata() (asldro.containers.image.BaseImageContainer property)
METHODS (asldro.filters.image_tools.FloatToIntImageFilter attribute)
MODEL_FULL (asldro.filters.gkm_filter.GkmFilter attribute)
MODEL_WP (asldro.filters.gkm_filter.GkmFilter attribute)
module
asldro
asldro.containers
asldro.containers.image
asldro.data
asldro.data.affine_test_data
asldro.data.filepaths
asldro.definitions
asldro.filters
asldro.filters.acquire_mri_image_filter
asldro.filters.add_complex_noise_filter
asldro.filters.add_noise_filter
asldro.filters.affine_matrix_filter
asldro.filters.append_metadata_filter
asldro.filters.asl_quantification_filter
asldro.filters.background_suppression_filter
asldro.filters.basefilter
asldro.filters.combine_fuzzy_masks_filter
asldro.filters.combine_time_series_filter
asldro.filters.create_volumes_from_seg_mask
asldro.filters.filter_block
asldro.filters.fourier_filter
asldro.filters.gkm_filter
asldro.filters.ground_truth_loader
asldro.filters.image_tools
asldro.filters.invert_image_filter
asldro.filters.json_loader
asldro.filters.load_asl_bids_filter
asldro.filters.mri_signal_filter
asldro.filters.nifti_loader
asldro.filters.phase_magnitude_filter
asldro.filters.resample_filter
asldro.filters.scale_offset_filter
asldro.filters.transform_resample_image_filter
asldro.pipelines
asldro.pipelines.check_nifti_units
asldro.pipelines.combine_masks
asldro.pipelines.generate_ground_truth
asldro.utils
asldro.utils.general
asldro.utils.generate_numeric_function
asldro.utils.resampling
asldro.validators
asldro.validators.ground_truth_json
asldro.validators.parameters
asldro.validators.schemas
asldro.validators.schemas.index
asldro.validators.user_parameter_input
MriSignalFilter (class in asldro.filters.mri_signal_filter)
N
NEAREST (asldro.filters.resample_filter.ResampleFilter attribute)
nifti_type() (asldro.containers.image.NiftiImageContainer property)
NiftiImageContainer (class in asldro.containers.image)
NiftiLoaderFilter (class in asldro.filters.nifti_loader)
non_empty_list_validator() (in module asldro.validators.parameters)
NumpyImageContainer (class in asldro.containers.image)
O
of_length_validator() (in module asldro.validators.parameters)
optimise_inv_pulse_times() (asldro.filters.background_suppression_filter.BackgroundSuppressionFilter static method)
or_validator() (in module asldro.validators.parameters)
P
Parameter (class in asldro.validators.parameters)
ParameterValidator (class in asldro.validators.parameters)
PASL (asldro.filters.gkm_filter.GkmFilter attribute)
PCASL (asldro.filters.gkm_filter.GkmFilter attribute)
PhaseMagnitudeFilter (class in asldro.filters.phase_magnitude_filter)
R
range_exclusive_validator() (in module asldro.validators.parameters)
range_inclusive_validator() (in module asldro.validators.parameters)
regex_validator() (in module asldro.validators.parameters)
ResampleFilter (class in asldro.filters.resample_filter)
reserved_string_list_validator() (in module asldro.validators.parameters)
rot_x_mat() (in module asldro.utils.resampling)
rot_y_mat() (in module asldro.utils.resampling)
rot_z_mat() (in module asldro.utils.resampling)
ROUND (asldro.filters.image_tools.FloatToIntImageFilter attribute)
run() (asldro.filters.basefilter.BaseFilter method)
(asldro.filters.filter_block.FilterBlock method)
S
scale_mat() (in module asldro.utils.resampling)
ScaleOffsetFilter (class in asldro.filters.scale_offset_filter)
shape() (asldro.containers.image.BaseImageContainer property)
(asldro.containers.image.NiftiImageContainer property)
(asldro.containers.image.NumpyImageContainer property)
shape_validator() (in module asldro.validators.parameters)
space_units() (asldro.containers.image.BaseImageContainer property)
(asldro.containers.image.NiftiImageContainer property)
(asldro.containers.image.NumpyImageContainer property)
splitext() (in module asldro.utils.general)
T
time_step_seconds() (asldro.containers.image.BaseImageContainer property)
(asldro.containers.image.NiftiImageContainer property)
(asldro.containers.image.NumpyImageContainer property)
time_units() (asldro.containers.image.BaseImageContainer property)
(asldro.containers.image.NiftiImageContainer property)
(asldro.containers.image.NumpyImageContainer property)
transform_resample_affine() (in module asldro.utils.resampling)
transform_resample_image() (in module asldro.utils.resampling)
TransformResampleImageFilter (class in asldro.filters.transform_resample_image_filter)
translate_mat() (in module asldro.utils.resampling)
TRUNCATE (asldro.filters.image_tools.FloatToIntImageFilter attribute)
V
validate() (asldro.validators.parameters.ParameterValidator method)
validate_input() (in module asldro.validators.ground_truth_json)
validate_input_params() (in module asldro.validators.user_parameter_input)
ValidationError
Validator (class in asldro.validators.parameters)
VOXEL_SIZE (asldro.filters.transform_resample_image_filter.TransformResampleImageFilter attribute)
voxel_size_mm() (asldro.containers.image.BaseImageContainer property)
(asldro.containers.image.NiftiImageContainer property)
(asldro.containers.image.NumpyImageContainer property)
W
WHITEPAPER (asldro.filters.asl_quantification_filter.AslQuantificationFilter attribute)
Read the Docs
v: latest
Versions
latest
stable
Downloads
pdf
html
epub
On Read the Docs
Project Home
Builds